Homology Modeling in CASP6 (Critical Assessment of Techniques for Protein Structure Prediction) Using CHIMERA and FAMS
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FAMS and FAMSBASE: Modeling of All the Genomes and Database
We had participated in the CASP4 (Fourth Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction) that is the competition of the protein structure prediction in 2000 [3]. Our server were estimated almost the best in the CAFASP2 (Critical Assessment of Fully Automated Structure Prediction) that is the full automatic homology modeling section of CASP4 [...
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We had participated in the CASP (Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction) that is the competition of the protein structure prediction in 2000 and 2002. Our server were estimated almost the best as the individual homology modeling server in the CAFASP3 (Critical Assessment of Fully Automated Structure Prediction) that is the full automa...
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The Robetta server and revised automatic protocols were used to predict structures for CASP6 targets. Robetta is a publicly available protein structure prediction server (http://robetta.bakerlab.org/ that uses the Rosetta de novo and homology modeling structure prediction methods. We incorporated some of the lessons learned in the CASP5 experiment into the server prior to participating in CASP6...
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The CASP community-wide assessment of protein structure prediction methods (CASP6, 2004, http://predictioncenter. llnl.gov/casp6/) anniversary coincides with a general realization of the need to speed progress, and achieve sustained success in protein structure prediction [see the NIGMS-NIH new initiative for improving protein structure prediction methods (http://www.nigms.nih.gov/)], toward wh...
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The prediction of a protein three-dimensional (3D) structure is one of the most important challenges in computational structural biology. We have developed an automatic protein 3D structure prediction method called FAMSD. FAMSD is based on a comparative modeling method which consists of the following four steps: (1) generating and selecting sequence alignments between target and template protei...
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